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Articles of 2017

  1. The Hitchhiker’s Guide to the Cancer Galaxy: How two critics missed their destination

    The Hitchhiker’s Guide to the Cancer Galaxy: How two critics missed their destination

    Organisms. Journal of Biological Sciences


    Two theories aim to understand cancer: the reductionist Somatic Mutation Theory (SMT) and the organicist Tissue Organization Field Theory (TOFT).

    Manuscript Citation Publisher Full text

    Abstract:

    Two main theories aim at understanding carcinogenesis: the reductionist smt locates cancer in cancer cells, while the organicist toft locates cancer at the tissue level. For toft, the ‘cancer cell’ is a phlogiston, smt is an old paradigm which ought to be replaced. Recently two critics have argued that toft and smt, despite their apparent strong incompatibilities, are actually compatible. Here we review their arguments. We show that these arguments are based on interpretation mistakes that become understandable once one grants that criticizing a paradigm from the point of view of another, in which words do not have the same signification, bears the risk of strong misunderstandings. These misunderstandings, in our experience, are common. We hope that this discussion will help clarifying the differences between toft and smt.

    Keywords: TOFT, reductionism, organicism, levels of organization, SMT

    Citation:

    Montévil, Maël, and Arnaud Pocheville. 2017. “The Hitchhiker’s Guide to the Cancer Galaxy: How Two Critics Missed Their Destination.” Organisms. Journal of Biological Sciences 1 (2): 37–48. https://doi.org/10.13133/2532-5876_2.9

  2. From Logic to Biology via Physics: a survey

    From Logic to Biology via Physics: a survey

    Logical Methods in Computer Science


    We summarize the theoretical ideas of our book, Perspectives on Organisms, where we discuss biological time, anti-entropy, randomness, incompleteness, etc.

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    Abstract:

    This short text summarizes the work in biology proposed in our book, Perspectives on Organisms, where we analyse the unity proper to organisms by looking at it from different viewpoints. We discuss the theoretical roles of biological time, complexity, theoretical symmetries, singularities and critical transitions. We explicitly borrow from the conclusions in some key chapters and introduce them by a reflection on "incompleteness", also proposed in the book. We consider that incompleteness is a fundamental notion to understand the way in which we construct knowledge. Then we will introduce an approach to biological dynamics where randomness is central to the theoretical determination: randomness does not oppose biological stability but contributes to it by variability, adaptation, and diversity. Then, evolutionary and ontogenetic trajectories are continual changes of coherence structures involving symmetry changes within an ever-changing global stability.

    Keywords: Incompleteness, symmetries, randomness, critical transitions, biological evolution and ontogenesis

    Citation:

    Longo, Giuseppe, and Maël Montévil. 2017. “From Logic to Biology via Physics: A Survey.” Logical Methods in Computer Science 13 (November): Issue 4; 1860-5974. https://doi.org/10.23638/LMCS-13(4:21)2017