Contents tagged “theoretical biology”

There are 6 contents with the tag “theoretical biology”:

  1. Understanding living beings by analogy with computers or understanding computers as an emanation of the living

    Understanding living beings by analogy with computers or understanding computers as an emanation of the living

    Trópoς. Rivista di ermeneutica e critica filosofica

    A new look at theoretical computer sciences by changing perspective with a biological approach.

    Abstract

    The analogy between living beings and computers was introduced with circumspection by Schrödinger and has been widely propagated since, rarely with a precise technical meaning. Critics of this perspective are numerous. We emphasize that this perspective is mobilized to justify what may be called a regressive reductionism by comparison with physics or the Cartesian method.
    Other views on the living are possible, and we focus on an epistemological and theoretical framework where historicity is central, and the regularities susceptible to mathematization are constraints whose existence is fundamentally precarious and historically contingent.
    We then propose to reinterpret the computer, no longer as a Turing machine but as constituted by constraints. This move allows us to understand that computation in the sense of Church-Turing is only a part of the theoretical determination of what actually happens in a computer when considering them in their larger theoretical context where historicity is also central.

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  2. Penser au-delà de l’identité : philosophie et sciences

    Penser au-delà de l’identité : philosophie et sciences

    Philosophy World Democracy

    Si la philosophie est entrée en stasis et se porte vers un nécessaire Autre Commencement de la Philosophie, alors les sciences aussi sont à un autre commencement.

    Abstract

    Ce texte est le séminaire public donné le 31 mai à l’École Normale Supérieure de Paris. Les sciences se sont écartées de la philosophie. Si la philosophie est entrée en stasis et se porte vers un nécessaire Autre Commencement de la Philosophie, alors les sciences aussi sont à un autre commencement. L’Anastasis des sciences exige une enquête sur la persistance des concepts théologiques en leur sein et en même temps la découverte de nouveaux principes par lesquels les sciences peuvent recommencer de telle manière qu’elles soient libérées des fardeaux métaphysiques. Les homologies d’un autre commencement des sciences sont déjà visibles dans les crises conceptuelles, y compris dans les concepts de singularité en physique et d’immunité en biologie. Pour commencer à nouveau, une épistémologie bâtarde est proposée comme nouveau rapport entre les sciences et la famille bâtarde de la déconstruction.

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  3. Conceptual and Theoretical Specifications for Accuracy in Medicine

    Conceptual and Theoretical Specifications for Accuracy in Medicine

    Personalized Medicine in the Making: Philosophical Perspectives from Biology to Healthcare

    We question some aspects of medicine from the perspective of theoretical biology, on the one hand, and the technological and social dimension of health and disease on the other hand.

    Abstract

    Technological developments in genomics and other -omics originated the idea that precise measurements would lead to better therapeutic strategies. However, precision does not entail accuracy. Scientific accuracy requires a theoretical framework to understand the meaning of measurements, the nature of causal relationships, and potential intrinsic limitations of knowledge. For example, a precise measurement of initial positions in classical mechanics is useless without initial velocities; it is not an accurate measurement of the initial condition. Conceptual and theoretical accuracy is required for precision to lead to the progress of knowledge and rationality in action. In the search for accuracy in medicine, we first outline our results on a theory of organisms. Biology is distinct from physics and requires a specific epistemology. In particular, we develop the meaning of biological measurements and emphasize that variability and historicity are fundamental notions. However, medicine is not just biology; we articulate the historicity of biological norms that stems from evolution and the idea that patients and groups of patients generate new norms to overcome pathological situations. Patients then play an active role, in line with the philosophy of Georges Canguilhem. We argue that taking this dimension of medicine into account is critical for theoretical accuracy.

    Keywords: Normativity, Organization, Personalized Medicine, Technology, theoretical biology

    Citation
    Montévil, Maël. 2022. “Conceptual and Theoretical Specifications for Accuracy in Medicine.” In Personalized Medicine in the Making: Philosophical Perspectives from Biology to Healthcare, edited by Chiara Beneduce and Marta Bertolaso, 47–62. Human Perspectives in Health Sciences et Technology. Springer International Publishing. https://doi.org/10.1007/978-3-030-74804-3_3
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  4. Which first principles for mathematical modelling in biology?

    Which first principles for mathematical modelling in biology?

    Rendiconti di Matematica e delle sue Applicazioni

    Like theoretical physics, theoretical biology is not just mathematical modeling. Instead, it should strive to find principles to frame experiments and models.

    Abstract

    Like theoretical physics, theoretical biology is not just mathematical modeling. Instead, theoretical biology should strive to find suitable first principles to ground the understanding of biological phenomena and ultimately frame biological experiments and mathematical models. First principles in physics are expressed in terms of symmetries and the associated conservations, on the one side, and optimization on the other side. In biology, we argue instead that a strong notion of variation is fundamental. This notion encompasses new possibilities and the historicity of biological phenomena. By contrast, the relative regularity of some aspects of biological organisms, which we call constraints, should be regarded as the consequence of a mutual stabilization of the parts of organisms. We exemplify several aspects of this framework with the modeling of allometric relationships. Our change of perspective leads to reconsider the meaning of measurements and the structure of the space of description.

    Keywords: Allometry, first principles, Historicity, invariants, theoretical biology, Variability

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  5. From the Century of the Gene to that of the Organism: Introduction to New Theoretical Perspectives

    From the Century of the Gene to that of the Organism: Introduction to New Theoretical Perspectives

    Life Sciences, Information Sciences

    Our group proposes three main principles for a theory of organisms, namely: the default state, the principle of variation and the principle of organization.

    Abstract

    Summary This chapter briefly presents and describes the three main principles that the group proposes for a theory of organisms, namely: the default state, proliferation with variation and motility, the principle of variation and the principle of organization. It is crucial to critique the philosophical and theoretical position on which the biological research feeding into the program is based and which has dominated biomedical research for the last 70 years. Physical theories are founded on stable mathematical structures, based onregularities and especially on theoretical symmetries. At the time of cell theory formulation and still today, cell theory plays a federating role between evolution biology and organism biology. Finally, analysis of the differences between the physics of inanimate and living matter leads to the proposal of three principles that provide aviable perspective for the construction of a necessary theory of organisms.

    Keywords: cell theory, evolution biology, mathematical structures, organism biology, philosophical position, physical theories, theoretical symmetries

    Citation
    Montévil, Maël, Giuseppe Longo, and Ana M. Soto. 2018. “From the Century of the Gene to That of the Organism: Introduction to New Theoretical Perspectives.” In Life Sciences, Information Sciences, edited by T. Gaudin, D. Lacroix, M.‐C. Maurel, and J.‐C. Pomerol, 81–97. John Wiley & Sons, Ltd. https://doi.org/10.1002/9781119452713.ch9
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  6. The Inert vs. the Living State of Matter: Extended Criticality, Time Geometry, Anti-Entropy — an overview

    The Inert vs. the Living State of Matter: Extended Criticality, Time Geometry, Anti-Entropy — an overview

    Frontiers in Physiology

    The physical singularity of life phenomena is analyzed by a comparison with the theories of the inert with a focus on criticality, time, and anti-entropy.

    Abstract

    The physical singularity of life phenomena is analyzed by means of comparison with the driving concepts of theories of the inert. We outline conceptual analogies, transferals of methodologies and theoretical instruments between physics and biology, in addition to indicating significant differences and sometimes logical dualities. In order to make biological phenomenalities intelligible, we introduce theoretical extensions to certain physical theories. In this synthetic paper, we summarize and propose a unified conceptual framework for the main conclusions drawn from work spanning a book and several articles, quoted throughout.

    Keywords: criticality, biological time, anti-entropy, theoretical biology, symmetry, allometry, incompleteness

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